v0.9.0

Removed kg_raw and kept raw as the single folder path for all dev related datasets #1723
Removed deprecated 'kedro submit' command in favor of 'kedro experiment run` #1725
Update catalog names after GCP directory cleanup #1698
Import pandera schema from matrix-schema package #1641

Experiment with degree weighting to address the frequent flyer issue. See notebook here
Experiment with degree bias to address the frequent flyer issue. See notebook here
Does filtering for biologically-relevant edges improve our predictions? An experiment using PRIME-KG. See notebook here
Identification of an optimal combinations of 3-5 large language models (LLMs) for biomedical publication validation - determining whether PubMed abstracts support given hypotheses/edges. See notebook here
Test the feasibility and utility of applying TracIn to interpret predictions from KGE models. See report here
Experiment with novel ensemble classifiers to increase prediction accuracy. See notebook here
Experiment with weighting synthesized negative samples to increase prediction accuracy. See notebook here
Experiment with enhanced embeddings to increase prediction accuracy in zero shot settings. See notebook here
Experiment benchmarking different ground truth sets for training Matrix pipeline. See notebook here

Fix pipeline for disease split experiments #1560
Update pandera version to 0.25.0 #1670
Remove EC medical team dataset #1686
Trim kedro nodes to 63 not 36 #1694
Add max retry attemps to node normalizer call #1711
Fix sentinel node's to read normalizer endpoint #1719
Fix codebase following Pandera 0.24.0 breaking change #1659
Revert pandera utils to previous pandera API #1666
Moved PVC for services into one region #1667
Revert pandera to safe version to avoid breaking changes #1665
Update file paths for spoke nodes and edges #1680
Hotfix: replace ingested disease list with integrated (and normalized) disease list #1681
Random failure when pulling disease and drug lists from core #1688
Added atomic and timeout to Helm release configuration in Terraform for stability #1658
Removed kedro nodes label #1660
Hotfix: Fix incorrect coalescing order for normalize_edges #1663
Add path filter to docs deploy github action #1721
Refactor CI tests to run sequentially for clarity and error handling #1672
Update registry variable in scheduled sampling pipeline #1710
Hotfix/hardcode public kg raw folder in catalog #1676
Add QC and unit tests fixes post normalization bug fix #1673

Add public GCS bucket configuration and update data paths for public datasets. #1677
Refactor variables service account and #1685
Delete obsolete workbenches #1687
Update argo workflow to use trimmed_kedro_nodes in workflow template for labels #1693
Add external subcon standard to bucket listing permissions for embiol… #1702
Added getting variables from the github env #1642
Added management pool for ArgoCD to put all workloads on it #1643
Changed Vertex AI Timeout from 20 minutes to an hour #1654
Removed dataminded from matrix repo #1655
Allow orchard dev compute sa to read matrix dev bucket #1662
Delete local cached files with make clean #1722